This won't help with everything you asked for but there is neat piece of software called Complete Anatomy that helped me with this sort of thing.
It renders an interactive model of the human body and you can toggle different layers, from bones to nerves, to various layers of muscles and ligaments. It also contains animations of treatment exercises/stretches, surgeries and highly detailed models of various biological components.
It helped me understand my injury and why certain exercises help. It's paid software but it comes with a free trial.
I have arthrtic knees, and I'd like a better understanding of how joints work, and where the various clicks, pops and swellings come from.
It's easy to find really simple things, but harder to understand "how things go wrong".